HHsearch alignment for GI: 254780217 and conserved domain: TIGR02902
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.84 E-value=2e-20 Score=184.05 Aligned_cols=210 Identities=20% Similarity=0.262 Sum_probs=152.0
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCCCCCHHHCCCC--CCC
Q ss_conf 6655558756561092999999999998288981663117989888999999999981-7799886431210126--788
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPD--PCS 78 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll-c~~~~~~~~~~~~~~~--~~~ 78 (347)
T Consensus 55 L~Ek~RP~SF~EIiGQe~GI~ALKAALCGPNPQH-VIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDATT~R 133 (532)
T TIGR02902 55 LSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQH-VIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDATTAR 133 (532)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
T ss_conf 7746677763325673556899998606868963-898788696178999999998650875378988668985051036
Q ss_pred HHHHHHHC---CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 67999967---898754530010001013421232378875544310222111121035322055424000145677766
Q gi|254780217|r 79 PFVKQMAS---HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 (347)
Q Consensus 79 ~~~~~i~~---~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE 155 (347)
T Consensus 134 FDERGIADPLIGSVHDPIYQGAGplG~AGIPQP----------K~GAVT~-AHGG--vLFIDEIGELHP~~MNKLLKVLE 200 (532)
T TIGR02902 134 FDERGIADPLIGSVHDPIYQGAGPLGVAGIPQP----------KPGAVTK-AHGG--VLFIDEIGELHPVQMNKLLKVLE 200 (532)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCC-CCCC--EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 021466665677615853337654578855758----------7776320-2586--55121246658243531411330
Q ss_pred HCCCCCCEE-----------------------------E---EECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHH----
Q ss_conf 303434167-----------------------------6---5044335730252036988647999899999999----
Q gi|254780217|r 156 EPPQKVLFI-----------------------------L---ISHASPTILSTIRSRCLSIKFNSLSENNLYKALE---- 199 (347)
Q Consensus 156 EPp~~t~fi-----------------------------L---it~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~---- 199 (347)
T Consensus 201 D---RKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC~EIFFR~L~~EEi~~iAk~Aae 277 (532)
T TIGR02902 201 D---RKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLKEEIKEIAKNAAE 277 (532)
T ss_pred C---CCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 2---2200001235877786542789972067873401213336987767834650522677168887899999876565
Q ss_pred HHCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 727888967899999975989789998814
Q gi|254780217|r 200 QLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 200 ~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
T Consensus 278 KIg~~l~~~Al~~I~~Ya~-nGREAvN~~Q 306 (532)
T TIGR02902 278 KIGLNLEKEALDLIAKYAS-NGREAVNLVQ 306 (532)
T ss_pred HCCCCCCHHHHHHHHHHHC-CCCHHHHHHH
T ss_conf 3046547547999998740-5406778999