HHsearch alignment for GI: 254780217 and conserved domain: TIGR02902

>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.84  E-value=2e-20  Score=184.05  Aligned_cols=210  Identities=20%  Similarity=0.262  Sum_probs=152.0

Q ss_pred             CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCCCCCHHHCCCC--CCC
Q ss_conf             6655558756561092999999999998288981663117989888999999999981-7799886431210126--788
Q gi|254780217|r    2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPD--PCS   78 (347)
Q Consensus         2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll-c~~~~~~~~~~~~~~~--~~~   78 (347)
T Consensus        55 L~Ek~RP~SF~EIiGQe~GI~ALKAALCGPNPQH-VIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDATT~R  133 (532)
T TIGR02902        55 LSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQH-VIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDATTAR  133 (532)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
T ss_conf             7746677763325673556899998606868963-898788696178999999998650875378988668985051036


Q ss_pred             HHHHHHHC---CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             67999967---898754530010001013421232378875544310222111121035322055424000145677766
Q gi|254780217|r   79 PFVKQMAS---HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE  155 (347)
Q Consensus        79 ~~~~~i~~---~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE  155 (347)
T Consensus       134 FDERGIADPLIGSVHDPIYQGAGplG~AGIPQP----------K~GAVT~-AHGG--vLFIDEIGELHP~~MNKLLKVLE  200 (532)
T TIGR02902       134 FDERGIADPLIGSVHDPIYQGAGPLGVAGIPQP----------KPGAVTK-AHGG--VLFIDEIGELHPVQMNKLLKVLE  200 (532)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCC-CCCC--EEEECCCCCCCHHHHHHHHHHHH
T ss_conf             021466665677615853337654578855758----------7776320-2586--55121246658243531411330


Q ss_pred             HCCCCCCEE-----------------------------E---EECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHH----
Q ss_conf             303434167-----------------------------6---5044335730252036988647999899999999----
Q gi|254780217|r  156 EPPQKVLFI-----------------------------L---ISHASPTILSTIRSRCLSIKFNSLSENNLYKALE----  199 (347)
Q Consensus       156 EPp~~t~fi-----------------------------L---it~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~----  199 (347)
T Consensus       201 D---RKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC~EIFFR~L~~EEi~~iAk~Aae  277 (532)
T TIGR02902       201 D---RKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLKEEIKEIAKNAAE  277 (532)
T ss_pred             C---CCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             2---2200001235877786542789972067873401213336987767834650522677168887899999876565


Q ss_pred             HHCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf             727888967899999975989789998814
Q gi|254780217|r  200 QLKIMGWDSKRDFVKIAAYGSVARAIKILH  229 (347)
Q Consensus       200 ~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~  229 (347)
T Consensus       278 KIg~~l~~~Al~~I~~Ya~-nGREAvN~~Q  306 (532)
T TIGR02902       278 KIGLNLEKEALDLIAKYAS-NGREAVNLVQ  306 (532)
T ss_pred             HCCCCCCHHHHHHHHHHHC-CCCHHHHHHH
T ss_conf             3046547547999998740-5406778999