HHsearch alignment for GI: 254780217 and conserved domain: TIGR03015
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.92 E-value=1.7e-08 Score=87.97 Aligned_cols=206 Identities=17% Similarity=0.171 Sum_probs=136.0
Q ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC-CCHHHHH
Q ss_conf 555875656109299999999999828898166311798988899999999998177998864312101267-8867999
Q gi|254780217|r 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP-CSPFVKQ 83 (347)
Q Consensus 5 ~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~-~~~~~~~ 83 (347)
T Consensus 16 ~pd~~~~y~s~~h~~al~~L~~~l~~~~g~--~lltGe~GtGKTtllr~l~~~l~~~~~---~~~~i~~~~l~~~~ll~~ 90 (269)
T TIGR03015 16 LPDPDFFYPSKGHKRAMAYLEYGLSQREGF--ILITGEVGAGKTTLIRNLLKRLDQERV---VAAKLVNTRVDAEDLLRM 90 (269)
T ss_pred CCCHHHCCCCHHHHHHHHHHHHHHHCCCCE--EEEECCCCCCHHHHHHHHHHHCCCCCE---EEEEECCCCCCHHHHHHH
T ss_conf 998454147866999999999999648965--999729989889999999984593454---899976999999999999
Q ss_pred HHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH--HHHCCCCC
Q ss_conf 9678987545300100010134212323788755443102221111210353220554240001456777--66303434
Q gi|254780217|r 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS--LEEPPQKV 161 (347)
Q Consensus 84 i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~--LEEPp~~t 161 (347)
T Consensus 91 i~~~l-------g~~~~~---~----~~~~~~~~l~~~L~~~~~~g~~~vliIDEAq~L~~~~Le~Lr~L~n~e~~~~~l 156 (269)
T TIGR03015 91 VAADF-------GLETEG---R----DKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKL 156 (269)
T ss_pred HHHHC-------CCCCCC---C----CHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 99985-------989889---8----999999999999999996699469997242219999999999997013588870
Q ss_pred CEEEEECCCC---C----CCHHHHCEE-EEEECCCCCHHHHHHHHHHH----C----CCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 1676504433---5----730252036-98864799989999999972----7----88896789999997598978999
Q gi|254780217|r 162 LFILISHASP---T----ILSTIRSRC-LSIKFNSLSENNLYKALEQL----K----IMGWDSKRDFVKIAAYGSVARAI 225 (347)
Q Consensus 162 ~fiLit~~~~---~----il~TI~SRc-~~i~f~~l~~~~~~~~L~~~----~----~~~~~~~~~~~~~~s~Gs~~~A~ 225 (347)
T Consensus 157 l~iiL~GqpeL~~~L~~~~~~~l~qRI~~~~~L~pl~~eet~~YI~~RL~~AG~~~~~~Ft~~A~~~I~~~S~G~PR~IN 236 (269)
T TIGR03015 157 LQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLIN 236 (269)
T ss_pred EEEEEECCHHHHHHHCCCCHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 48999578679998727402545550767998479998999999999998669999998599999999998699008999
Q ss_pred HHHC
Q ss_conf 8814
Q gi|254780217|r 226 KILH 229 (347)
Q Consensus 226 ~ll~ 229 (347)
T Consensus 237 ~Lc~ 240 (269)
T TIGR03015 237 ILCD 240 (269)
T ss_pred HHHH
T ss_conf 9999