HHsearch alignment for GI: 254780217 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.50 E-value=0.00015 Score=56.36 Aligned_cols=134 Identities=12% Similarity=0.258 Sum_probs=91.7
Q ss_pred HHHCCHHHHHHHHHHHHHCCC--------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CCCCHHHCCCCCCCHHHH
Q ss_conf 561092999999999998288--------98166311798988899999999998177998-864312101267886799
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGR--------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDF-SKAPVRMCNPDPCSPFVK 82 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~--------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~-~~~~~~~~~~~~~~~~~~ 82 (347)
T Consensus 566 ~~ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~DMSEy~E--~hsvsr 643 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE--AHTVSR 643 (852)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCC--HHHHHH
T ss_conf 997284999999999999987179999998568998789987789999999999719861147842243210--436878
Q ss_pred HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC----
Q ss_conf 9967898754530010001013421232378875544310222111121035322055424000145677766303----
Q gi|254780217|r 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP---- 158 (347)
Q Consensus 83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp---- 158 (347)
T Consensus 644 L--iGaPPGYVGy~----e-GG-----~LTe~V-------rr~P----ysVvLfDEIEKAHpdV~nilLQvlD~G~LtD~ 700 (852)
T TIGR03345 644 L--KGSPPGYVGYG----E-GG-----VLTEAV-------RRKP----YSVVLLDEVEKAHPDVLELFYQVFDKGVMEDG 700 (852)
T ss_pred H--CCCCCCCCCCC----C-CC-----HHHHHH-------HHCC----CEEEEECHHHHCCHHHHHHHHHHHCCCEEECC
T ss_conf 6--38999766748----7-77-----210988-------8099----86888611300288999999987246777579
Q ss_pred -------CCCCEEEEECCC
Q ss_conf -------434167650443
Q gi|254780217|r 159 -------QKVLFILISHAS 170 (347)
Q Consensus 159 -------~~t~fiLit~~~ 170 (347)
T Consensus 701 ~Gr~vdF~NtIIImTSN~G 719 (852)
T TIGR03345 701 EGREIDFKNTVILLTSNAG 719 (852)
T ss_pred CCCEEECEEEEEEECCCHH
T ss_conf 9998845212999757244