HHsearch alignment for GI: 254780217 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.93 E-value=3.6e-08 Score=85.38 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=125.5
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCC
Q ss_conf 56561092999999999998288981663117989888999999999981779988643121012678867999967898
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~h 89 (347)
T Consensus 171 klDpviGRd~Ei~r~i~IL~Rr~KNN-piLVGepGVGKTAIvEGLA~rI~~g~VP~~L----~~~--------------- 230 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNN-PVLIGEPGVGKTAIVEGLAQRIVNGDVPESL----KNK--------------- 230 (852)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCC-CCEECCCCCCHHHHHHHHHHHHHCCCCCHHH----HHC---------------
T ss_conf 99977383699999999998732489-7212799987999999999998669999788----518---------------
Q ss_pred CCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC--------CHHHHHHHHHHHHHCCCCC
Q ss_conf 75453001000101342123237887554431022211112103532205542--------4000145677766303434
Q gi|254780217|r 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM--------NRNAANALLKSLEEPPQKV 161 (347)
Q Consensus 90 pd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~l--------n~~AaNALLK~LEEPp~~t 161 (347)
T Consensus 231 -~i~~LDlg~LvAGtkyRGeF-EeRlk~ii~ev~~~~---~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLar--Gel 303 (852)
T TIGR03346 231 -RLLALDMGALIAGAKYRGEF-EERLKAVLNEVTKSE---GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GEL 303 (852)
T ss_pred -CCEEEEHHHHHCCCCCCHHH-HHHHHHHHHHHHHCC---CCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHC--CCC
T ss_conf -51275288775215300789-999999999998589---98799961255532688766641067774378747--985
Q ss_pred CEEEEECCCC--CC---CHHHHCEEEEEECCCCCHHHHHHHHHH--------HCCCCCHHHHHHHHHHCCC------CHH
Q ss_conf 1676504433--57---302520369886479998999999997--------2788896789999997598------978
Q gi|254780217|r 162 LFILISHASP--TI---LSTIRSRCLSIKFNSLSENNLYKALEQ--------LKIMGWDSKRDFVKIAAYG------SVA 222 (347)
Q Consensus 162 ~fiLit~~~~--~i---l~TI~SRc~~i~f~~l~~~~~~~~L~~--------~~~~~~~~~~~~~~~~s~G------s~~ 222 (347)
T Consensus 304 r~IgATT~~EYrk~iEkD~AL~RRFq~I~V~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav~LS~RYi~~R~LPD 383 (852)
T TIGR03346 304 HCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPD 383 (852)
T ss_pred EEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 59982789999988322688997377120479986899999997699997627926739999999997134667788961
Q ss_pred HHHHHHCCCH
Q ss_conf 9998814577
Q gi|254780217|r 223 RAIKILHYDC 232 (347)
Q Consensus 223 ~A~~ll~~~~ 232 (347)
T Consensus 384 KAIDlLDeA~ 393 (852)
T TIGR03346 384 KAIDLIDEAA 393 (852)
T ss_pred HHHHHHHHHH
T ss_conf 8999999999