HHsearch alignment for GI: 254780217 and conserved domain: cd00046
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.40 E-value=0.033 Score=37.48 Aligned_cols=127 Identities=18% Similarity=0.116 Sum_probs=54.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCH-------HHHHHHCCCCCCEEEECCCCHH----HCCC
Q ss_conf 6311798988899999999998177998864312101267886-------7999967898754530010001----0134
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP-------FVKQMASHALHDFLYLSYSLNP----KTGK 105 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~hpd~~~i~~~~~~----k~~~ 105 (347)
T Consensus 3 ~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~--~lil--~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 77 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDSLKGGQ--VLVL--APTRELANQVAERLKELFG-EGIKVGYLIGGTSIKQQEKLLS 77 (144)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCE--EEEE--CCHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHC
T ss_conf 999889971799999999999997568976--9997--4679999999999999748-8717999961363677898745
Q ss_pred CCCCCCHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHCCHHHHHH-HHHHHHHCCCCCCEEEEEC
Q ss_conf 21232378875544310222-111121035322055424000145-6777663034341676504
Q gi|254780217|r 106 WRTVITVDEIRRIRYFLSLT-ANTGYWRVIMIDPVDGMNRNAANA-LLKSLEEPPQKVLFILISH 168 (347)
Q Consensus 106 ~~~~I~vd~IR~l~~~~~~~-~~~~~~Ki~IId~ad~ln~~AaNA-LLK~LEEPp~~t~fiLit~ 168 (347)
T Consensus 78 ~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lSA 142 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSA 142 (144)
T ss_pred CCCCEEECCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCEEEECC
T ss_conf 89849982889999999738765551009999888876437969999999996799994899828