HHsearch alignment for GI: 254780217 and conserved domain: cd01121
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.85 E-value=0.013 Score=40.57 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=68.3
Q ss_pred HHHHHHHCCCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC----------------------CCCH
Q ss_conf 999999828898-16631179898889999999999817799886431210126----------------------7886
Q gi|254780217|r 23 FLSQYYCSGRMH-HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD----------------------PCSP 79 (347)
Q Consensus 23 ~L~~~~~~~~l~-ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~----------------------~~~~ 79 (347)
T Consensus 70 ElDRVLGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGEES~~QIk~RA~RLg~~~~~l~l~set~le~ 149 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLED 149 (372)
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCHHH
T ss_conf 66540057730671799825998868899999999998639938998245678999989998587887727884356999
Q ss_pred HHHHHHCCCCCCEEEECCCC---HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 79999678987545300100---010134212323788755443102221111210353220554240001456777663
Q gi|254780217|r 80 FVKQMASHALHDFLYLSYSL---NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 80 ~~~~i~~~~hpd~~~i~~~~---~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
T Consensus 150 Il~~i-~~~kP~~lIIDSIQT~~~~~--~~s~pGsvsQVReca~~L~~~AK~~~i~~~lV---GHVTK~G~iAGPkvLEH 223 (372)
T cd01121 150 ILASI-EELKPDLVIIDSIQTVYSSE--LTSAPGSVSQVRECTAELMRFAKERNIPIFIV---GHVTKEGSIAGPKVLEH 223 (372)
T ss_pred HHHHH-HHHCCCEEEEECHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE---EEECCCCCCCCCHHHEE
T ss_conf 99999-97199889995622020377--67799878999999999999998619739999---87626886377403100
Q ss_pred CCCCCCEEEE--ECCCCCCCHHHHCE
Q ss_conf 0343416765--04433573025203
Q gi|254780217|r 157 PPQKVLFILI--SHASPTILSTIRSR 180 (347)
Q Consensus 157 Pp~~t~fiLi--t~~~~~il~TI~SR 180 (347)
T Consensus 224 mV-DtVl~fEgd~~~~~R~LR~~KNR 248 (372)
T cd01121 224 MV-DTVLYFEGDRHSEYRILRSVKNR 248 (372)
T ss_pred EE-EEEEEECCCCCCCEEEEEEECCC
T ss_conf 21-36887515776550356741156