HHsearch alignment for GI: 254780217 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.74 E-value=0.049 Score=36.06 Aligned_cols=35 Identities=29% Similarity=0.287 Sum_probs=23.5
Q ss_pred HHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99999828-898166311798988899999999998
Q gi|254780217|r 24 LSQYYCSG-RMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 24 L~~~~~~~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
T Consensus 8 lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~ 43 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred HHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996507996478799999999984999999999998