HHsearch alignment for GI: 254780217 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.

Probab=94.36  E-value=0.028  Score=38.05  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=19.8

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             63117989888999999999981
Q gi|254780217|r   37 LLFEGEQGIGKATLGFRYAGHVL   59 (347)
Q Consensus        37 ~Lf~Gp~GiGK~~~A~~~A~~ll   59 (347)
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a   24 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGL   24 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHH
T ss_conf             15876899999999999999998