HHsearch alignment for GI: 254780217 and conserved domain: cd02038
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=90.85 E-value=0.49 Score=27.99 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=55.1
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHH
Q ss_conf 31179898889999999999817799886431210126788679999678987545300100010134212323788755
Q gi|254780217|r 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 (347)
Q Consensus 38 Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~ 117 (347)
T Consensus 4 v~sgKgGvGkt~~~~nLa~~la~~-G~~vl---l~D~D~-------g~an~~~D~viiD~~aG----~-----~-~~~-- 60 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKL-GKRVL---LLDADL-------GLANLDYDYIIIDTGAG----I-----S-DNV-- 60 (139)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHC-CCCEE---EEECCC-------CCCCCCCCEEEEECCCC----C-----C-HHH--
T ss_conf 964999983999999999999978-99699---998989-------99657999999948999----8-----7-789--
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 4431022211112103532205542400014567776630343416765044
Q gi|254780217|r 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 (347)
Q Consensus 118 l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~ 169 (347)
T Consensus 61 -~~~~~-----~ad~~lvV~tpeptSi~DAYalIK~l~~~~~~~~~~lvvN~ 106 (139)
T cd02038 61 -LDFFL-----AADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNR 106 (139)
T ss_pred -HHHHH-----HCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf -99999-----58957999589706799999999999996399975999956