HHsearch alignment for GI: 254780217 and conserved domain: cd03223
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.00 E-value=0.024 Score=38.61 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 121035322055-4240001456777663034341676504433
Q gi|254780217|r 129 GYWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASP 171 (347)
Q Consensus 129 ~~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~ 171 (347)
T Consensus 108 ~~p~iliLDEpTs~LD~~~~~~l~~~l~~~--~~Tvi~VtH~~~ 149 (166)
T cd03223 108 HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS 149 (166)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHC--CCEEEEEECCHH
T ss_conf 499999975853328999999999999977--998999943469