HHsearch alignment for GI: 254780217 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.007 Score=42.87 Aligned_cols=134 Identities=15% Similarity=0.103 Sum_probs=67.2
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCC-CCHHH
Q ss_conf 66311798988899999999998177998864312101267886799996789875453001000101342123-23788
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV-ITVDE 114 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~-I~vd~ 114 (347)
T Consensus 30 ~i~ivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~tv-------~eNiLSgGq 101 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSG-EILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTI-------RENILSGGQ 101 (171)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCH-------HHHCCCHHH
T ss_conf 9999999998399999999767758974-89999999885998998631899966684375779-------997744889
Q ss_pred HHHHHHHCCC-CCCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 7554431022-2111121035322055-4240001456777663034341676504433573025203698864
Q gi|254780217|r 115 IRRIRYFLSL-TANTGYWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 115 IR~l~~~~~~-~~~~~~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
T Consensus 102 ~Q----ri~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~Tvi~vtH~~~~~-----~~~D~v~~ 166 (171)
T cd03228 102 RQ----RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI-----RDADRIIV 166 (171)
T ss_pred HH----HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH-----HHCCEEEE
T ss_conf 99----9999999974899899957766799899999999999980999899995799999-----70999999