HHsearch alignment for GI: 254780217 and conserved domain: cd03230
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.28 E-value=0.42 Score=28.55 Aligned_cols=133 Identities=19% Similarity=0.123 Sum_probs=0.0
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHH
Q ss_conf 11798988899999999998177998864312101267886799996789875453001000101342123237887554
Q gi|254780217|r 39 FEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 (347)
Q Consensus 39 f~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l 118 (347)
T Consensus 31 l~G~NGaGKSTLl~~i~G--l~~p~~G~i~i~g~~~~~~~~~~~~~ig~v~q~~~l~~------------~ltv~e~l~L 96 (173)
T cd03230 31 LLGPNGAGKTTLIKIILG--LLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYE------------NLTVRENLKL 96 (173)
T ss_pred EECCCCCCHHHHHHHHHC--CCCCCCCEEEECCEECCCCHHHHHCCEEEEECCCCCCC------------CCCHHHHHHC
T ss_conf 987899799999999976--85778788999999988684888657899956876671------------2677898633
Q ss_pred HHHCCC-----CCCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEE
Q ss_conf 431022-----2111121035322055-424000145677766303434167650443357302520369886
Q gi|254780217|r 119 RYFLSL-----TANTGYWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 (347)
Q Consensus 119 ~~~~~~-----~~~~~~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~ 185 (347)
T Consensus 97 SgG~kqrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~i~~l~~~g~tvi~~tH~l~~~~~~~dri~vl~ 169 (173)
T cd03230 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILN 169 (173)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEE
T ss_conf 9899999999999964999999908865799999999999999999689999999283899998699999993