HHsearch alignment for GI: 254780217 and conserved domain: cd03239
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=92.37 E-value=0.32 Score=29.46 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=29.1
Q ss_pred CHHHHHHHHHH-CCHHHHHHHHHHHHHCCC-CCCEEEEECCCCCC
Q ss_conf 10353220554-240001456777663034-34167650443357
Q gi|254780217|r 131 WRVIMIDPVDG-MNRNAANALLKSLEEPPQ-KVLFILISHASPTI 173 (347)
Q Consensus 131 ~Ki~IId~ad~-ln~~AaNALLK~LEEPp~-~t~fiLit~~~~~i 173 (347)
T Consensus 117 ~p~~iLDEvdAaLD~~N~~r~~~~i~el~~~~sQfIiITH~~~~m 161 (178)
T cd03239 117 SPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF 161 (178)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 966998276554798899999999999973899899998689999