HHsearch alignment for GI: 254780217 and conserved domain: cd03246
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.08 E-value=0.012 Score=41.04 Aligned_cols=130 Identities=20% Similarity=0.151 Sum_probs=64.1
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC---CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCC-CH
Q ss_conf 63117989888999999999981779988643121012678---867999967898754530010001013421232-37
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC---SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI-TV 112 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~---~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I-~v 112 (347)
T Consensus 31 vaIvG~sGsGKSTLl~ll~gl~~p~----~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~-------ti~eNiLSG 99 (173)
T cd03246 31 LAIIGPSGSGKSTLARLILGLLRPT----SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-------SIAENILSG 99 (173)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCC----CCEEEECCEECCCCCHHHHHCCEEEEECCCEECCC-------CHHHHCCCH
T ss_conf 9999999980999999996666679----99899999993328998984208999088836777-------589976769
Q ss_pred HHH-HHHHHHCCCCCCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 887-5544310222111121035322055-42400014567776630-34341676504433573025203698864
Q gi|254780217|r 113 DEI-RRIRYFLSLTANTGYWRVIMIDPVD-GMNRNAANALLKSLEEP-PQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 113 d~I-R~l~~~~~~~~~~~~~Ki~IId~ad-~ln~~AaNALLK~LEEP-p~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
T Consensus 100 GQkQRvalA----Ral~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vtH~~~----~~~-~aD~Iiv 167 (173)
T cd03246 100 GQRQRLGLA----RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE----TLA-SADRILV 167 (173)
T ss_pred HHHHHHHHH----HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH----HHH-HCCEEEE
T ss_conf 999999999----9982799999996876689989999999999978648989999847999----998-4999999