HHsearch alignment for GI: 254780217 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.24 E-value=0.006 Score=43.37 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=36.1
Q ss_pred CCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEE
Q ss_conf 21035322055-424000145677766303434167650443357302520369886
Q gi|254780217|r 130 YWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 (347)
Q Consensus 130 ~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~ 185 (347)
T Consensus 168 ~p~ililDEptSaLD~~te~~i~~~l~~~~~~~Tvi~ItH~l~----~~~-~~DrIi 219 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLS----TVE-RADQIL 219 (226)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHH----HHH-HCCEEE
T ss_conf 9999999797668899999999999998669999999937999----998-499999