>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=96.35  E-value=0.0044  Score=44.48  Aligned_cols=52  Identities=15%  Similarity=0.239  Sum_probs=40.1

Q ss_pred             CCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf             21035322055-4240001456777663034341676504433573025203698864
Q gi|254780217|r  130 YWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF  186 (347)
Q Consensus       130 ~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f  186 (347)
T Consensus       155 ~~~ililDEpts~LD~~te~~i~~~l~~~~~~~Tvi~itHr~~----~~~~-~D~Iiv  207 (236)
T cd03253         155 NPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLS----TIVN-ADKIIV  207 (236)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHH----HHHH-CCEEEE
T ss_conf             9999999687567998999999999999809998999826878----8985-999999