HHsearch alignment for GI: 254780217 and conserved domain: cd04160
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=91.04 E-value=0.82 Score=26.22 Aligned_cols=127 Identities=14% Similarity=0.154 Sum_probs=59.8
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCC----CCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCC
Q ss_conf 66311798988899999999998177998----86431210126788679999678987545300100010134212323
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDF----SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVIT 111 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~----~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~ 111 (347)
T Consensus 1 ~ivilG~~~~GKTsll~~l~~-~~~~~~~~~~~~~~~Tvg~~----------~~~i~~~~~~l~--iwD~~--------G 59 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKT-LFSKYKGLPPSKITPTVGLN----------IGTIEVGNARLK--FWDLG--------G 59 (167)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCCCCCCCCCCCCCCCEE----------EEEEEECCEEEE--EEECC--------C
T ss_conf 999999999888899998875-03676777655403531326----------899998999999--99689--------8
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-HHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHCEEEEEECCCC
Q ss_conf 78875544310222111121035322055424-0001456777663-034341676504433573025203698864799
Q gi|254780217|r 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-RNAANALLKSLEE-PPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 (347)
Q Consensus 112 vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-~~AaNALLK~LEE-Pp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l 189 (347)
T Consensus 60 qe~~~~l~~~y~~~a-~--~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~D-l~~------------~~ 123 (167)
T cd04160 60 QESLRSLWDKYYAEC-H--AIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQD-LPD------------AL 123 (167)
T ss_pred CHHHHHHHHHHCCCC-C--EEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC-CCC------------CC
T ss_conf 788878998742898-7--8999986686788999999999975110248962999970667-665------------77
Q ss_pred CHHHHHHHHH
Q ss_conf 9899999999
Q gi|254780217|r 190 SENNLYKALE 199 (347)
Q Consensus 190 ~~~~~~~~L~ 199 (347)
T Consensus 124 ~~~ei~~~~~ 133 (167)
T cd04160 124 SVEEIKEVFQ 133 (167)
T ss_pred CHHHHHHHHH
T ss_conf 8999999999