HHsearch alignment for GI: 254780217 and conserved domain: pfam00158
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=97.74 E-value=0.00024 Score=54.68 Aligned_cols=116 Identities=17% Similarity=0.242 Sum_probs=60.6
Q ss_pred HCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH--CCCCCCCHHHHHHHCCCCC
Q ss_conf 10929999999999982-88981663117989888999999999981779988643121--0126788679999678987
Q gi|254780217|r 14 LFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM--CNPDPCSPFVKQMASHALH 90 (347)
Q Consensus 14 i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~--~~~~~~~~~~~~i~~~~hp 90 (347)
T Consensus 1 lIG~S~~m~~l~~~i~~~a~~~~pVLI~GE~GtGK~~lAr~IH~~--S--~r~~~pfi~vnc~~~~~~~le~~L-FG~~~ 75 (168)
T pfam00158 1 LIGESPAMQEVLELAKRVAPTDATVLITGESGTGKELFARAIHQL--S--PRADGPFVAVNCAAIPEELLESEL-FGHEK 75 (168)
T ss_pred CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH--C--CCCCCCCCCCCCCCCCHHHHHHHH-CCCCC
T ss_conf 973899999999999999588998899899988889999999985--2--435688312567899877999987-58766
Q ss_pred CEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 545300100010134212323788755443102221111210353220554240001456777663
Q gi|254780217|r 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 91 d~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
T Consensus 76 g~f---------~ga~~-------~~--~G~le--~A~g--GTL~LdeI~~L~~~~Q~~Ll~~L~~ 119 (168)
T pfam00158 76 GAF---------TGAVS-------DR--KGLFE--LADG--GTLFLDEIGELPLELQAKLLRVLQE 119 (168)
T ss_pred CCC---------CCCCC-------CC--CCCEE--ECCC--CEEECCCHHHCCHHHHHHHHHHHHC
T ss_conf 766---------89875-------78--99642--2699--8788024413999999999999857