HHsearch alignment for GI: 254780217 and conserved domain: pfam00158

>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=97.74  E-value=0.00024  Score=54.68  Aligned_cols=116  Identities=17%  Similarity=0.242  Sum_probs=60.6

Q ss_pred             HCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH--CCCCCCCHHHHHHHCCCCC
Q ss_conf             10929999999999982-88981663117989888999999999981779988643121--0126788679999678987
Q gi|254780217|r   14 LFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM--CNPDPCSPFVKQMASHALH   90 (347)
Q Consensus        14 i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~--~~~~~~~~~~~~i~~~~hp   90 (347)
T Consensus         1 lIG~S~~m~~l~~~i~~~a~~~~pVLI~GE~GtGK~~lAr~IH~~--S--~r~~~pfi~vnc~~~~~~~le~~L-FG~~~   75 (168)
T pfam00158         1 LIGESPAMQEVLELAKRVAPTDATVLITGESGTGKELFARAIHQL--S--PRADGPFVAVNCAAIPEELLESEL-FGHEK   75 (168)
T ss_pred             CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH--C--CCCCCCCCCCCCCCCCHHHHHHHH-CCCCC
T ss_conf             973899999999999999588998899899988889999999985--2--435688312567899877999987-58766


Q ss_pred             CEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             545300100010134212323788755443102221111210353220554240001456777663
Q gi|254780217|r   91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE  156 (347)
Q Consensus        91 d~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE  156 (347)
T Consensus        76 g~f---------~ga~~-------~~--~G~le--~A~g--GTL~LdeI~~L~~~~Q~~Ll~~L~~  119 (168)
T pfam00158        76 GAF---------TGAVS-------DR--KGLFE--LADG--GTLFLDEIGELPLELQAKLLRVLQE  119 (168)
T ss_pred             CCC---------CCCCC-------CC--CCCEE--ECCC--CEEECCCHHHCCHHHHHHHHHHHHC
T ss_conf             766---------89875-------78--99642--2699--8788024413999999999999857