HHsearch alignment for GI: 254780217 and conserved domain: pfam00176
>pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Probab=93.20 E-value=0.82 Score=26.21 Aligned_cols=143 Identities=14% Similarity=0.215 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCC--EEE
Q ss_conf 299999999999828898166311798988899999999998177998864312101267886799996789875--453
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD--FLY 94 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd--~~~ 94 (347)
T Consensus 2 Q~~gv~wl~~~~~~~~--g-giLaDeMGLGKTiq~ia~l~~~~~~~~~~~~~LIV~P~sl~~~W~~Ei~~~-~~~~~~~~ 77 (295)
T pfam00176 2 QLEGVNWLISLYNNGL--G-GILADEMGLGKTLQTISLLAYLKELKPLAGPHLVVCPLSTLDNWLNEFEKW-APDLNIVV 77 (295)
T ss_pred HHHHHHHHHHHHHCCC--C-EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHH-CCCCCEEE
T ss_conf 7889999999872799--9-897227875799999999999998388999889997578887678899986-79970799
Q ss_pred ECCCCHHHCCC-------CC---CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 00100010134-------21---232378875544310222111121035322055424000145677766303434167
Q gi|254780217|r 95 LSYSLNPKTGK-------WR---TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 (347)
Q Consensus 95 i~~~~~~k~~~-------~~---~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fi 164 (347)
T Consensus 78 ~~~~~~~r~~~~~~~~~~~~~~ivitsY~~~~~~~~~l~----~~~w~~vI~DEaH~iKN-~~s~~~~a~~~l~~~~r~~ 152 (295)
T pfam00176 78 YYGDGDSRSELLRNVLRTGKFDVLITSYEYIRRDKDELH----KANWRYVILDEGHRIKN-AKSKLSLALKSLKTNNRLL 152 (295)
T ss_pred EEECHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH----CCCCCEEEEECCCCCCC-HHHHHHHHHHHCCCCCEEE
T ss_conf 984707689998867741688599930999997599984----08765899876201258-7889999999523581899
Q ss_pred EEEC
Q ss_conf 6504
Q gi|254780217|r 165 LISH 168 (347)
Q Consensus 165 Lit~ 168 (347)
T Consensus 153 LTGT 156 (295)
T pfam00176 153 LTGT 156 (295)
T ss_pred EECC
T ss_conf 8687