HHsearch alignment for GI: 254780217 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.10 E-value=0.04 Score=36.72 Aligned_cols=27 Identities=11% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 898166311798988899999999998
Q gi|254780217|r 32 RMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 32 ~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
T Consensus 17 ~~G~l~vi~g~pg~GKS~~~~~~a~~~ 43 (186)
T pfam03796 17 QKGDLIIIAARPSMGKTAFALNIARNA 43 (186)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 888179999679998799999999999