HHsearch alignment for GI: 254780217 and conserved domain: pfam06068
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=99.00 E-value=3.2e-08 Score=85.84 Aligned_cols=224 Identities=19% Similarity=0.248 Sum_probs=140.4
Q ss_pred CCCCCCC-HHHHCCHHHHHHH---HHHHHHCCCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC-CHHHCCCCC-
Q ss_conf 5555875-6561092999999---99999828898-166311798988899999999998177998864-312101267-
Q gi|254780217|r 4 RAFDPVY-NQRLFGHEDIEKF---LSQYYCSGRMH-HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA-PVRMCNPDP- 76 (347)
Q Consensus 4 ~~~~p~~-~~~i~G~~~~~~~---L~~~~~~~~l~-ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~-~~~~~~~~~- 76 (347)
T Consensus 15 ~~~~~~~~~~GlVGQ~~AReAagiiv~mIk~~K~aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~~i~gSEvyS~E~k 94 (395)
T pfam06068 15 EDGEARYVSEGLVGQEKAREAAGVIVEMIKEGKIAGRAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMK 94 (395)
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHEEECCCCC
T ss_conf 88888364577545499999989999999727757738998779998889999999997487997345001112125654
Q ss_pred ----CCHHHH-------------------------------------------------------------HH--HCCCC
Q ss_conf ----886799-------------------------------------------------------------99--67898
Q gi|254780217|r 77 ----CSPFVK-------------------------------------------------------------QM--ASHAL 89 (347)
Q Consensus 77 ----~~~~~~-------------------------------------------------------------~i--~~~~h 89 (347)
T Consensus 95 KTE~L~qafRrsIGvrIkE~~eVyEGEV~ei~~~~~~~p~~~~~k~~~~~~itLkT~~~~~~l~l~~~i~e~l~kekV~~ 174 (395)
T pfam06068 95 KTEALTQAFRKAIGVRIKEEKEVYEGEVVELEIEEAENPLSGYGKTIKHGKITLKTTKMEKTLKLGPKIYEQLQKEKVQA 174 (395)
T ss_pred HHHHHHHHHHHHHCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEECCHHHHHHHHHCCCCC
T ss_conf 88999999988755686788899999999999741468889876540379999997588178725889999999749866
Q ss_pred CCEEEECCCCHH-------------------------HCCC-------------------------------CCCCCCHH
Q ss_conf 754530010001-------------------------0134-------------------------------21232378
Q gi|254780217|r 90 HDFLYLSYSLNP-------------------------KTGK-------------------------------WRTVITVD 113 (347)
Q Consensus 90 pd~~~i~~~~~~-------------------------k~~~-------------------------------~~~~I~vd 113 (347)
T Consensus 175 GDVI~Id~~sG~V~klGRs~~~a~~~D~~~~~~V~~P~Gev~K~KEvv~~vTLHDlDv~Nar~qg~~slf~~~~~EIt-~ 253 (395)
T pfam06068 175 GDVIYIDKNTGKVKKLGRSFARATDFDLEATEFVPCPKGEVHKRKEVVQTVTLHDIDVANARPQGILSLFSPKKGEIT-S 253 (395)
T ss_pred CCEEEEECCCCEEEEEECCHHHHHHCCCCCCEEEECCCCCCEEEEEEEEEEEHHHHHHHCCCCCCHHHHHCCCCCCCC-H
T ss_conf 878999858715999762320343326665479778998624688999986123412221575256764179876069-9
Q ss_pred HHHH-HHHHCCCCCCCCC----CHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEC------------CCCCCCHH
Q ss_conf 8755-4431022211112----10353220554240001456777663034341676504------------43357302
Q gi|254780217|r 114 EIRR-IRYFLSLTANTGY----WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH------------ASPTILST 176 (347)
Q Consensus 114 ~IR~-l~~~~~~~~~~~~----~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~------------~~~~il~T 176 (347)
T Consensus 254 elR~eInk~V~~~i~eG~AElvpGVLFIDEvHMLDiEcFsfLnralEs~l-aPivI~ATNRG~~~IRGTd~~sPHGiP~D 332 (395)
T pfam06068 254 ELREEINKKVNKWIEEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEL-APIVILATNRGICTIRGTDIISPHGIPLD 332 (395)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCEEEECCHHCCHHHHHHHHHHHCCCC-CCEEEEEECCCCEEECCCCCCCCCCCCHH
T ss_conf 99999999999998648679842746885000000589988877650567-87699984465203525677588899877
Q ss_pred HHCEEEEEECCCCCHHHHHHHHH----HHCCCCCHHHHHHHHHHCC-CCHHHHHHHHC
Q ss_conf 52036988647999899999999----7278889678999999759-89789998814
Q gi|254780217|r 177 IRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAY-GSVARAIKILH 229 (347)
Q Consensus 177 I~SRc~~i~f~~l~~~~~~~~L~----~~~~~~~~~~~~~~~~~s~-Gs~~~A~~ll~ 229 (347)
T Consensus 333 lLDRllII~T~py~~~ei~~Ii~iRa~~E~v~l~~~al~~L~~ig~~~SLRYaiqLlt 390 (395)
T pfam06068 333 LLDRLLIITTEPYTREEIKQILEIRAQEEGVEISEEALDLLAKIGEETSLRYAIQLLT 390 (395)
T ss_pred HHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 7730258856889989999999987776078779899999998653202999998725