HHsearch alignment for GI: 254780217 and conserved domain: pfam09439
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=91.04 E-value=0.79 Score=26.33 Aligned_cols=131 Identities=15% Similarity=0.147 Sum_probs=57.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHH
Q ss_conf 16631179898889999999999817799886431210126788679999678987545300100010134212323788
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~ 114 (347)
T Consensus 4 ptvLllGl~~sGKT~Lf~~L~~~~~~~T~tS~~~n~----------~~~~~~~~~~~~~lvD~P------------Gh~k 61 (181)
T pfam09439 4 PAVIIAGLCDSGKTSLFTLLTTGSVRKTVTSQEPSA----------AYKYMNNKGNSLTLIDFP------------GHVK 61 (181)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCEECCCCCCC----------EEEEECCCCCEEEEEECC------------CCHH
T ss_conf 869998689998999999997599487588867864----------068751689668999889------------9689
Q ss_pred HHH-HHHHCCCCCCCCCCHHHHHHHH-HHCC-HHHHHHHHHHHHHC---CCCCCEEEEECCCCCCCHHHHCEEEEEECCC
Q ss_conf 755-4431022211112103532205-5424-00014567776630---3434167650443357302520369886479
Q gi|254780217|r 115 IRR-IRYFLSLTANTGYWRVIMIDPV-DGMN-RNAANALLKSLEEP---PQKVLFILISHASPTILSTIRSRCLSIKFNS 188 (347)
Q Consensus 115 IR~-l~~~~~~~~~~~~~Ki~IId~a-d~ln-~~AaNALLK~LEEP---p~~t~fiLit~~~~~il~TI~SRc~~i~f~~ 188 (347)
T Consensus 62 lR~~~~~~~~~~~-~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~~~~~~~~~vPvLI~cNKqD-l------------~~A 127 (181)
T pfam09439 62 LRYKLLETLKDSS-SLRGLVFVVDSTAFPKEVTDTAEFLYDILSITELLKNGIDILIACNKQE-I------------FTA 127 (181)
T ss_pred HHHHHHHHHHHHC-CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHCCCCCCEEEEEECCC-C------------CCC
T ss_conf 9999998643002-6449999997866566799999999999844543368997899973746-3------------357
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 9989999999972
Q gi|254780217|r 189 LSENNLYKALEQL 201 (347)
Q Consensus 189 l~~~~~~~~L~~~ 201 (347)
T Consensus 128 ~~~~~Ik~~LEkE 140 (181)
T pfam09439 128 RPPKKIKQALEKE 140 (181)
T ss_pred CCHHHHHHHHHHH
T ss_conf 7999999999999