HHsearch alignment for GI: 254780217 and conserved domain: smart00350
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.73 E-value=0.0011 Score=49.41 Aligned_cols=136 Identities=21% Similarity=0.234 Sum_probs=73.2
Q ss_pred HHHCCHHHHHHHHHHHHHCCC------------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCH
Q ss_conf 561092999999999998288------------98166311798988899999999998177998864312101267886
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGR------------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~------------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~ 79 (347)
T Consensus 203 P~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~ih-iLLvGDPGtgKSqlLk~~~~-ia---prsvytsG~gsS----- 272 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDIN-ILLLGDPGTAKSQLLKYVEK-TA---PRAVYTTGKGSS----- 272 (509)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCEE-EEEECCCCCCHHHHHHHHHH-HC---CCEEEEECCCCC-----
T ss_conf 732387889999999970887664898850415414-99846998236299999998-58---860687344455-----
Q ss_pred HHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 79999678987545300100010134212323788755443102221111210353220554240001456777663034
Q gi|254780217|r 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 (347)
Q Consensus 80 ~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~ 159 (347)
T Consensus 273 ---------~aGLT-aav~rd~~~ge-----------~~leaGALV--lAD~GiccIDEfdKm~~~dr~alhEaME---Q 326 (509)
T smart00350 273 ---------AVGLT-AAVTRDPETRE-----------FTLEGGALV--LADNGVCCIDEFDKMDDSDRTAIHEAME---Q 326 (509)
T ss_pred ---------CCCCE-EEEEECCCCCC-----------EEECCCCEE--CCCCCEEEEEEHHHCCHHHHHHHHHHHH---H
T ss_conf ---------57706-89998178883-----------787256412--0567547852132078778999999997---4
Q ss_pred CCCEEEEECCCCCCCHHHHCEEEEEECC
Q ss_conf 3416765044335730252036988647
Q gi|254780217|r 160 KVLFILISHASPTILSTIRSRCLSIKFN 187 (347)
Q Consensus 160 ~t~fiLit~~~~~il~TI~SRc~~i~f~ 187 (347)
T Consensus 327 Qtisi----aKaGi~~tL~aR~sVlAAa 350 (509)
T smart00350 327 QTISI----AKAGITTTLNARCSVLAAA 350 (509)
T ss_pred CEEEE----ECCCEEEEEECCCEEEEEE
T ss_conf 87787----4375179985573599865