HHsearch alignment for GI: 254780217 and conserved domain: smart00382

>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.06  E-value=1.7e-05  Score=63.86  Aligned_cols=131  Identities=18%  Similarity=0.162  Sum_probs=69.0

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf             81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r   34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD  113 (347)
Q Consensus        34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd  113 (347)
T Consensus         2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~----~~v~~~~~~---~~~~~~~~~~~--~~~~-----~--~~~~~~~~~~   65 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPG----GGVIYIDGE---DILEEVLDQLL--LIIV-----G--GKKASGSGEL   65 (148)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCC----CCEEEEEHH---HHHHHHHHHHH--HHHH-----C--CCCCCCCHHH
T ss_conf             97899999997029999999998726689----968998759---98988898765--3000-----1--1221051999


Q ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHH--------HHHHCCCCCCEEEEECC---CCCCCHHHHCEEE
Q ss_conf             875544310222111121035322055424000145677--------76630343416765044---3357302520369
Q gi|254780217|r  114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK--------SLEEPPQKVLFILISHA---SPTILSTIRSRCL  182 (347)
Q Consensus       114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK--------~LEEPp~~t~fiLit~~---~~~il~TI~SRc~  182 (347)
T Consensus        66 ~~~~~~~~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~~~~~~~~~~~~~~~~~  141 (148)
T smart00382       66 RLRLALALARKLK----PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRR  141 (148)
T ss_pred             HHHHHHHHHHHCC----CCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCEE
T ss_conf             9999999998449----989998275021476207999999999985176578998999956995224987707447879


Q ss_pred             EE
Q ss_conf             88
Q gi|254780217|r  183 SI  184 (347)
Q Consensus       183 ~i  184 (347)
T Consensus       142 ~~  143 (148)
T smart00382      142 IV  143 (148)
T ss_pred             EE
T ss_conf             99