HHsearch alignment for GI: 254780217 and conserved domain: smart00382
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.06 E-value=1.7e-05 Score=63.86 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=69.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~----~~v~~~~~~---~~~~~~~~~~~--~~~~-----~--~~~~~~~~~~ 65 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG----GGVIYIDGE---DILEEVLDQLL--LIIV-----G--GKKASGSGEL 65 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCC----CCEEEEEHH---HHHHHHHHHHH--HHHH-----C--CCCCCCCHHH
T ss_conf 97899999997029999999998726689----968998759---98988898765--3000-----1--1221051999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHH--------HHHHCCCCCCEEEEECC---CCCCCHHHHCEEE
Q ss_conf 875544310222111121035322055424000145677--------76630343416765044---3357302520369
Q gi|254780217|r 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK--------SLEEPPQKVLFILISHA---SPTILSTIRSRCL 182 (347)
Q Consensus 114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK--------~LEEPp~~t~fiLit~~---~~~il~TI~SRc~ 182 (347)
T Consensus 66 ~~~~~~~~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~~~~~~~~~~~~~~~~~ 141 (148)
T smart00382 66 RLRLALALARKLK----PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRR 141 (148)
T ss_pred HHHHHHHHHHHCC----CCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCEE
T ss_conf 9999999998449----989998275021476207999999999985176578998999956995224987707447879
Q ss_pred EE
Q ss_conf 88
Q gi|254780217|r 183 SI 184 (347)
Q Consensus 183 ~i 184 (347)
T Consensus 142 ~~ 143 (148)
T smart00382 142 IV 143 (148)
T ss_pred EE
T ss_conf 99