HHsearch alignment for GI: 254780217 and conserved domain: smart00534
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.64 E-value=0.053 Score=35.78 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=58.5
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHH
Q ss_conf 63117989888999999999981779988643121012678867999967898754530010001013421232378875
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR 116 (347)
T Consensus 2 ~iiTGpN~sGKSt~lk~i~l~~~laq~G~~vpa~~~~~~~~d~i~~-----------~i~~-~d~~~~~--~S~F~~e~~ 67 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFT-----------RIGA-SDSLAQG--LSTFMVEMK 67 (185)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEECCCEEEE-----------EECC-CCCCCCC--CCHHHHHHH
T ss_conf 8997999884899999999999999978886157719950310023-----------3564-1002156--418999999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 5443102221111210353220554240-----001456777663034341676504433
Q gi|254780217|r 117 RIRYFLSLTANTGYWRVIMIDPVDGMNR-----NAANALLKSLEEPPQKVLFILISHASP 171 (347)
Q Consensus 117 ~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----~AaNALLK~LEEPp~~t~fiLit~~~~ 171 (347)
T Consensus 68 ~~~~il~~~---~~~sLvliDEl~~GT~~~eg~ala~aile~l~~-~~~~~~iitTH~~e 123 (185)
T smart00534 68 ETANILKNA---TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHE 123 (185)
T ss_pred HHHHHHHHC---CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHH
T ss_conf 999999838---987376304113688814789999999999996-36975998604378