RPSBLAST alignment for GI: 254780217 and conserved domain: TIGR00678

>gnl|CDD|161993 TIGR00678, holB, DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. Length = 188

 Score =  155 bits (393), Expect = 2e-38
 Identities = 64/180 (35%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 22  KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP-CSPF 80
           + L +    GR+ HA LF G +G+GK  L    A  +L        P   C   P C   
Sbjct: 2   QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEP---CGECPSC--- 55

Query: 81  VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD 140
            + + +    D   L     P+       I VD++R +  FLS T      RV++I+  +
Sbjct: 56  -RLIEAGNHPDLHRLE----PEGQS----IKVDQVRELVEFLSRTPQESGRRVVIIEDAE 106

Query: 141 GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200
            MN  AANALLK+LEEPP   LFILI+ +   +L TIRSRC  + F  LSE  L + L +
Sbjct: 107 RMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIR 166