HHsearch alignment for GI: 254780218 and conserved domain: COG0552

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=97.94  E-value=1.1e-05  Score=54.27  Aligned_cols=81  Identities=30%  Similarity=0.500  Sum_probs=53.1

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHC----------CCCCCCCCCHHHHHHHHH
Q ss_conf             8886899867888797999999999999779819998778898441001100----------124445410134567778
Q gi|254780218|r    2 NSGLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHV----------LLSCGVDEFGAEAEAIVF   71 (225)
Q Consensus         2 ~~g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~----------l~~~~~~~~~~~~~~lLf   71 (225)
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA--~DTFRAaAiEQL~~w~er~gv~vI~~~-~G~DpAa--Vaf  211 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAA--GDTFRAAAIEQLEVWGERLGVPVISGK-EGADPAA--VAF  211 (340)
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHHHHHHHHCCEEECCC-CCCCCHH--HHH
T ss_conf             98679999934888637179999999997898699982--334789999999999999599278259-9998089--999


Q ss_pred             HHHHHHHHHHHHHHHHCCC-CEEEEC
Q ss_conf             8999997763565542345-258723
Q gi|254780218|r   72 AAARLDHVENVIRPALMEG-KILLCD   96 (225)
Q Consensus        72 aadr~~~~~~~I~p~L~~g-~iVI~D   96 (225)
T Consensus       212 ---------DAi~~Akar~~DvvliD  228 (340)
T COG0552         212 ---------DAIQAAKARGIDVVLID  228 (340)
T ss_pred             ---------HHHHHHHHCCCCEEEEE
T ss_conf             ---------99999997699999996