HHsearch alignment for GI: 254780218 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=94.51 E-value=0.03 Score=33.72 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=43.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCC-CCHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 998678887979999999999997798199987788984410011001244454-10134567778899999-7763565
Q gi|254780218|r 7 ISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVD-EFGAEAEAIVFAAARLD-HVENVIR 84 (225)
Q Consensus 7 I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~-~~~~~~~~lLfaadr~~-~~~~~I~ 84 (225)
T Consensus 51 mIl~GPPG~GKTTlA~liA~~~~---~~f~~~s--Av~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL 125 (436)
T COG2256 51 MILWGPPGTGKTTLARLIAGTTN---AAFEALS--AVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALL 125 (436)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC---CCEEEEC--CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHH
T ss_conf 57778999888899999987617---7669951--523467999999999999872588349987225333744565510
Q ss_pred HHHCCCCEEEEC
Q ss_conf 542345258723
Q gi|254780218|r 85 PALMEGKILLCD 96 (225)
Q Consensus 85 p~L~~g~iVI~D 96 (225)
T Consensus 126 p~vE~G~iilIG 137 (436)
T COG2256 126 PHVENGTIILIG 137 (436)
T ss_pred HHHCCCEEEEEE
T ss_conf 332488689996