HHsearch alignment for GI: 254780218 and conserved domain: PRK07261
>PRK07261 topology modulation protein; Provisional.
Probab=98.86 E-value=1.5e-07 Score=65.35 Aligned_cols=147 Identities=17% Similarity=0.199 Sum_probs=84.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89986788879799999999999977981999877889844100110012444541013456777889999977635655
Q gi|254780218|r 6 FISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVENVIRP 85 (225)
Q Consensus 6 ~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~~~I~p 85 (225)
T Consensus 2 rI~IiG~sGsGKSTlAr~L~~~~---~ip~~~LD------------~l~w~p~w~~-~~~~e~-----------~~~~~~ 54 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARFLGQHY---NCPVLHLD------------QLHFSSNWQE-RDDDDM-----------IADISN 54 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---CCCEEEEC------------CEEECCCCEE-CCHHHH-----------HHHHHH
T ss_conf 89998899986899999999987---97979702------------2788899988-889999-----------999999
Q ss_pred HHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHH-----HHCCHHH
Q ss_conf 42345258723542431000100344424577654442038898411566520348776443211111-----0000000
Q gi|254780218|r 86 ALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSL-----RESACLD 160 (225)
Q Consensus 86 ~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~-----~~~~~~d 160 (225)
T Consensus 55 ~~~~~~WIi-DGny~~~~~-------------~------~rl~~aD~iI~Ld~p~~~~l~rvikR~l~~~~~~r~~m~~g 114 (171)
T PRK07261 55 FLLKQDWII-EGNYSNCLY-------------E------ERMAEADQIIFLNFSRFNCLYRAFKRYLKYRGKTRPSMAEN 114 (171)
T ss_pred HHHCCCEEE-ECCCCCHHH-------------H------HHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 984898799-478512477-------------7------67977999999858499999999999999827758765789
Q ss_pred HHHHCCHHHHHHH---------HHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf 0211288999999---------99999999978994999818978899
Q gi|254780218|r 161 YFERKDVMIHEKR---------RQIFLDIARNQPDRCHIVDSAHSFQS 199 (225)
Q Consensus 161 ~~E~~~~~~~~kv---------~~~y~~la~~~~~~~~~IDa~~~~ee 199 (225)
T Consensus 115 ~~E~~~~~fl~wi~~~~~~k~~~~~~~~~~~~~~~kviilks~rev~~ 162 (171)
T PRK07261 115 CPEKFDVEFVKWILLDGRSKKQKENYQSVVQKYSHKTIVLKNQKELDQ 162 (171)
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf 934102999999973464411279999998746898899879999999