HHsearch alignment for GI: 254780218 and conserved domain: PRK07261

>PRK07261 topology modulation protein; Provisional.
Probab=98.86  E-value=1.5e-07  Score=65.35  Aligned_cols=147  Identities=17%  Similarity=0.199  Sum_probs=84.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89986788879799999999999977981999877889844100110012444541013456777889999977635655
Q gi|254780218|r    6 FISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVENVIRP   85 (225)
Q Consensus         6 ~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~~~I~p   85 (225)
T Consensus         2 rI~IiG~sGsGKSTlAr~L~~~~---~ip~~~LD------------~l~w~p~w~~-~~~~e~-----------~~~~~~   54 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARFLGQHY---NCPVLHLD------------QLHFSSNWQE-RDDDDM-----------IADISN   54 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH---CCCEEEEC------------CEEECCCCEE-CCHHHH-----------HHHHHH
T ss_conf             89998899986899999999987---97979702------------2788899988-889999-----------999999


Q ss_pred             HHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHH-----HHCCHHH
Q ss_conf             42345258723542431000100344424577654442038898411566520348776443211111-----0000000
Q gi|254780218|r   86 ALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSL-----RESACLD  160 (225)
Q Consensus        86 ~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~-----~~~~~~d  160 (225)
T Consensus        55 ~~~~~~WIi-DGny~~~~~-------------~------~rl~~aD~iI~Ld~p~~~~l~rvikR~l~~~~~~r~~m~~g  114 (171)
T PRK07261         55 FLLKQDWII-EGNYSNCLY-------------E------ERMAEADQIIFLNFSRFNCLYRAFKRYLKYRGKTRPSMAEN  114 (171)
T ss_pred             HHHCCCEEE-ECCCCCHHH-------------H------HHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             984898799-478512477-------------7------67977999999858499999999999999827758765789


Q ss_pred             HHHHCCHHHHHHH---------HHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf             0211288999999---------99999999978994999818978899
Q gi|254780218|r  161 YFERKDVMIHEKR---------RQIFLDIARNQPDRCHIVDSAHSFQS  199 (225)
Q Consensus       161 ~~E~~~~~~~~kv---------~~~y~~la~~~~~~~~~IDa~~~~ee  199 (225)
T Consensus       115 ~~E~~~~~fl~wi~~~~~~k~~~~~~~~~~~~~~~kviilks~rev~~  162 (171)
T PRK07261        115 CPEKFDVEFVKWILLDGRSKKQKENYQSVVQKYSHKTIVLKNQKELDQ  162 (171)
T ss_pred             CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf             934102999999973464411279999998746898899879999999