HHsearch alignment for GI: 254780218 and conserved domain: PRK08118
>PRK08118 topology modulation protein; Reviewed.
Probab=98.91 E-value=5.1e-08 Score=68.11 Aligned_cols=144 Identities=22% Similarity=0.220 Sum_probs=79.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98886899867888797999999999999779819998778898441001100124445410134567778899999776
Q gi|254780218|r 1 MNSGLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVE 80 (225)
Q Consensus 1 M~~g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~ 80 (225)
T Consensus 1 M~r---I~IiG~~GsGKSTlAr~L~~~~---~ip~~~LD------------~l~w~~~w~~-~~~~e~-----------~ 50 (167)
T PRK08118 1 MKK---IILIGSGGSGKSTLARQLGEKL---NIPVHHLD------------ALFWKPNWEG-VPKEEQ-----------R 50 (167)
T ss_pred CCE---EEEECCCCCCHHHHHHHHHHHH---CCCEEECC------------CEEECCCCCC-CCHHHH-----------H
T ss_conf 967---9998899987999999999988---96979644------------3476689946-888999-----------9
Q ss_pred HHHHHHHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHH-----HH
Q ss_conf 3565542345258723542431000100344424577654442038898411566520348776443211111-----00
Q gi|254780218|r 81 NVIRPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSL-----RE 155 (225)
Q Consensus 81 ~~I~p~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~-----~~ 155 (225)
T Consensus 51 ~~~~~~~~~~~WIi-dGny~~~-----------------~~~---r~~~aD~iI~Ld~p~~~~~~r~~kR~~~~~~~~r~ 109 (167)
T PRK08118 51 TVQNELVKEDEWII-DGNYGGT-----------------MDI---RLNAADTIIFLDIPRTICLYRAFKRRVQYRGKTRP 109 (167)
T ss_pred HHHHHHHHCCCEEE-ECCCHHH-----------------HHH---HHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999983898799-4771779-----------------987---79769999998598999999999999998177576
Q ss_pred CCHHHHHHHCCHHHHHHH-------HHHHHHHHHHCC--CCEEEECCCC
Q ss_conf 000000211288999999-------999999999789--9499981897
Q gi|254780218|r 156 SACLDYFERKDVMIHEKR-------RQIFLDIARNQP--DRCHIVDSAH 195 (225)
Q Consensus 156 ~~~~d~~E~~~~~~~~kv-------~~~y~~la~~~~--~~~~~IDa~~ 195 (225)
T Consensus 110 d~~~g~~E~~~~~fl~wi~~~~~~~r~~~~~~l~~~~~~~~vi~lks~~ 158 (167)
T PRK08118 110 DMGEGCPEKFDLQFFKWIWEYPKTKRPSILKRLNQLKEDKNVVILKSRN 158 (167)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCHHCCHHHHHHHHHCCCCCCEEEECCHH
T ss_conf 5689993625099999998584010199999998556798199977999