HHsearch alignment for GI: 254780218 and conserved domain: PRK11664
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=96.27 E-value=0.0096 Score=36.65 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHH--HHHHHHHHCCCCEEEEECC
Q ss_conf 88689986788879799999--9999999779819998778
Q gi|254780218|r 3 SGLFISFEGIEGAGKTTHIS--LLKRFLQRKNYDVHVTREP 41 (225)
Q Consensus 3 ~g~~I~iEGiDGsGKsTq~~--~L~~~L~~~g~~v~~~~eP 41 (225)
T Consensus 19 ~~~~~vl~a~tGsGKtTqvP~~ll~~~~-~~g-~I~-~~qP 56 (812)
T PRK11664 19 TAPQVLLKAPTGAGKSTWLPLQLLQQGG-ING-KII-MLEP 56 (812)
T ss_pred HCCEEEEEECCCCCHHHHHHHHHHHCCC-CCC-CEE-EECC
T ss_conf 7997999908999989999999996468-899-389-9388