HHsearch alignment for GI: 254780218 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=95.98  E-value=0.0022  Score=40.45  Aligned_cols=82  Identities=17%  Similarity=0.265  Sum_probs=43.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCC--CCHHHHHHHHHH--HHHH-HHHHH
Q ss_conf             998678887979999999999997798199987788984410011001244454--101345677788--9999-97763
Q gi|254780218|r    7 ISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVD--EFGAEAEAIVFA--AARL-DHVEN   81 (225)
Q Consensus         7 I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~--~~~~~~~~lLfa--adr~-~~~~~   81 (225)
T Consensus        55 ~Il~GPPGtGKTTLA~iIA~~t~~---~F~~ls--Av~sgvkdlr~ii~~A~~~~~~~g~~t--ILFIDEIHRfNK~QQD  127 (726)
T PRK13341         55 LILYGPPGVGKTTLARIIANHTRA---HFSSLN--AVLAGVKDLRAEVDAAKERLERHGKRT--ILFIDEVHRFNKAQQD  127 (726)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC---CEEEEE--CCCCCHHHHHHHHHHHHHHHHHCCCCE--EEEEECHHHCCHHHHH
T ss_conf             788897999999999999887488---679985--620377999999999999987459965--9998625425887899


Q ss_pred             HHHHHHCCCCEEEE
Q ss_conf             56554234525872
Q gi|254780218|r   82 VIRPALMEGKILLC   95 (225)
Q Consensus        82 ~I~p~L~~g~iVI~   95 (225)
T Consensus       128 ~LLp~vE~G~i~LI  141 (726)
T PRK13341        128 ALLPWVENGTVTLI  141 (726)
T ss_pred             HHHHHHCCCEEEEE
T ss_conf             87888606838999