HHsearch alignment for GI: 254780218 and conserved domain: PRK13826

>PRK13826 Dtr system oriT relaxase; Provisional.
Probab=96.25  E-value=0.02  Score=34.80  Aligned_cols=80  Identities=23%  Similarity=0.240  Sum_probs=50.9

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             86899867888797999999999999779819998778898441001100124445410134567778899999776356
Q gi|254780218|r    4 GLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVENVI   83 (225)
Q Consensus         4 g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~~~I   83 (225)
T Consensus       397 ~~Ia~VvG~AGaGKStmL~aAReawEa~GyrV~-----GaALsGkAAegL---e~~sGI~SrTlAs~e--~~w~~----g  462 (1102)
T PRK13826        397 ERIAAVIGRAGAGKTTMMKAAREAWEAAGYRVV-----GGALAGKAAEGL---EKEAGIASRTLSSWE--LRWNQ----G  462 (1102)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEE-----EECCCHHHHHHH---HHCCCCCCHHHHHHH--HHHCC----C
T ss_conf             866899842888788999999999997797798-----015007899977---534695303389999--87435----8


Q ss_pred             HHHHCCCCEEEECC
Q ss_conf             55423452587235
Q gi|254780218|r   84 RPALMEGKILLCDR   97 (225)
Q Consensus        84 ~p~L~~g~iVI~DR   97 (225)
T Consensus       463 r~~L~~~dVlVIDE  476 (1102)
T PRK13826        463 RDQLDNKTVFVLDE  476 (1102)
T ss_pred             CCCCCCCCEEEEEC
T ss_conf             65567873899845