HHsearch alignment for GI: 254780218 and conserved domain: PRK13826
>PRK13826 Dtr system oriT relaxase; Provisional.
Probab=96.25 E-value=0.02 Score=34.80 Aligned_cols=80 Identities=23% Similarity=0.240 Sum_probs=50.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86899867888797999999999999779819998778898441001100124445410134567778899999776356
Q gi|254780218|r 4 GLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVENVI 83 (225)
Q Consensus 4 g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~~~I 83 (225)
T Consensus 397 ~~Ia~VvG~AGaGKStmL~aAReawEa~GyrV~-----GaALsGkAAegL---e~~sGI~SrTlAs~e--~~w~~----g 462 (1102)
T PRK13826 397 ERIAAVIGRAGAGKTTMMKAAREAWEAAGYRVV-----GGALAGKAAEGL---EKEAGIASRTLSSWE--LRWNQ----G 462 (1102)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEE-----EECCCHHHHHHH---HHCCCCCCHHHHHHH--HHHCC----C
T ss_conf 866899842888788999999999997797798-----015007899977---534695303389999--87435----8
Q ss_pred HHHHCCCCEEEECC
Q ss_conf 55423452587235
Q gi|254780218|r 84 RPALMEGKILLCDR 97 (225)
Q Consensus 84 ~p~L~~g~iVI~DR 97 (225)
T Consensus 463 r~~L~~~dVlVIDE 476 (1102)
T PRK13826 463 RDQLDNKTVFVLDE 476 (1102)
T ss_pred CCCCCCCCEEEEEC
T ss_conf 65567873899845