HHsearch alignment for GI: 254780218 and conserved domain: PRK13948
>PRK13948 shikimate kinase; Provisional.
Probab=98.96 E-value=1.8e-08 Score=70.86 Aligned_cols=171 Identities=16% Similarity=0.201 Sum_probs=87.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86899867888797999999999999779819998778898441001100124445410134567778899999776356
Q gi|254780218|r 4 GLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVENVI 83 (225)
Q Consensus 4 g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~~~I 83 (225)
T Consensus 10 ~~~IvLIG~mGsGKStiGk~LA~~l---~~~fiD~D~~Ie~~~g~sI~eIF~~--------~GE~~-F---R-~~E~~~l 73 (182)
T PRK13948 10 ATFVALAGFMGTGKSRIGWELSRAL---ALHFVDTDKLITRVVGKSIPEVFAQ--------EGEEY-F---R-ACEKEVV 73 (182)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH---CCCEEECHHHHHHHHCCCHHHHHHH--------HCHHH-H---H-HHHHHHH
T ss_conf 9818988999998899999999996---9598888499999889399999998--------48999-9---9-9999999
Q ss_pred HHHHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 55423452587235424310001003444245776544420388984115665203487764432111110000000021
Q gi|254780218|r 84 RPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRESACLDYFE 163 (225)
Q Consensus 84 ~p~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E 163 (225)
T Consensus 74 ~~l~~~~~~VISt----------GGG~v~~~~n~~~l~~-------~g~vv~L~~~~~~i~~R~~~~~RPl-l~~~~~~~ 135 (182)
T PRK13948 74 RRVTRLDYAVISL----------GGGTFIHEENRRALLG-------RGPVVVLWASPETVYQRTKHSDRPL-LQVEDPLE 135 (182)
T ss_pred HHHHCCCCEEEEC----------CCCEECCHHHHHHHHH-------CCEEEEEECCHHHHHHHCCCCCCCC-CCCCCHHH
T ss_conf 9997479969975----------8850058999999996-------8989999699999998817899998-88998799
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 1288999999999999999789949998189788999999999999999864
Q gi|254780218|r 164 RKDVMIHEKRRQIFLDIARNQPDRCHIVDSAHSFQSVATNILNIVWELVQKR 215 (225)
Q Consensus 164 ~~~~~~~~kv~~~y~~la~~~~~~~~~IDa~~~~eei~~~I~~~i~~~l~k~ 215 (225)
T Consensus 136 ~l~~-l~~eR~~~Y~~-A----~-~~I~td~~~~~eiv~~Ii~~L~a~~~~~ 180 (182)
T PRK13948 136 RIRT-LMEEREPVYRQ-G----T-IHVHSDGRPVEEIVEEVVERLWAWAEAQ 180 (182)
T ss_pred HHHH-HHHHHHHHHHH-C----C-EEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9999-99999999996-7----8-8988998999999999999999998665