HHsearch alignment for GI: 254780218 and conserved domain: PRK13976

>PRK13976 thymidylate kinase; Provisional.
Probab=100.00  E-value=0  Score=386.07  Aligned_cols=193  Identities=38%  Similarity=0.669  Sum_probs=175.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68998678887979999999999997--7981999877889844100110012444541013456777889999977635
Q gi|254780218|r    5 LFISFEGIEGAGKTTHISLLKRFLQR--KNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVENV   82 (225)
Q Consensus         5 ~~I~iEGiDGsGKsTq~~~L~~~L~~--~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~~~   82 (225)
T Consensus         1 mfIvfEGiDGsGKsTq~~~L~~~L~~~~~~~~~~~trEPggt~~ge~IR~~ll~~--~~~~~~te~lLf~A~R~eh~~~~   78 (202)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSQIYGENNVVLTREPGGTSFNESVRGLLLST--KNLDKLSELLLFIAMRREHFVKV   78 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9899989999989999999999998606998689837999982789999997165--57996999999999999999999


Q ss_pred             HHHHHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             65542345258723542431000100344424577654442038898411566520348776443211111000000002
Q gi|254780218|r   83 IRPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRESACLDYF  162 (225)
Q Consensus        83 I~p~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~  162 (225)
T Consensus        79 I~PaL~~g~~VI~DRy~~St~AYQg~~~gl~~~~i~~l~~~~-~~~~PDlt~~Ldi~~e~al~R~~----------~~~~  147 (202)
T PRK13976         79 ILPALTQGKIVICDRFIDSTIAYQGYGCGIDLKLIRDLNDLV-VDIYPDITFILDIDINQSLSRAD----------KNGY  147 (202)
T ss_pred             HHHHHHCCCEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHH-CCCCCCEEEEEECCHHHHHHCCC----------CCCH
T ss_conf             888886699899748535578873226798999999999984-07898879998378899975214----------6862


Q ss_pred             HHCCHHHHHHHHHHHHHHHHHCCCCEEEE---CCCCCHHHHHHHHHHHHHH
Q ss_conf             11288999999999999999789949998---1897889999999999999
Q gi|254780218|r  163 ERKDVMIHEKRRQIFLDIARNQPDRCHIV---DSAHSFQSVATNILNIVWE  210 (225)
Q Consensus       163 E~~~~~~~~kv~~~y~~la~~~~~~~~~I---Da~~~~eei~~~I~~~i~~  210 (225)
T Consensus       148 e~~~~~f~~kVr~~Yl~la~~~~~r~~~I~~ida~~~i~~I~~~~~~ii~~  198 (202)
T PRK13976        148 EFMDLEFYARVRKGFQDIAKKNPHRCHLITCIDATDNINDINSVHLKIIKV  198 (202)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             120599999999999999985998789997035767989999999999999