HHsearch alignment for GI: 254780218 and conserved domain: TIGR00041
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=100.00 E-value=0 Score=388.60 Aligned_cols=199 Identities=39% Similarity=0.626 Sum_probs=185.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCHHHHC---CCCCCCCCCHHHHHHHHHHHHHH--
Q ss_conf 8868998678887979999999999997-79819998778898441001100---12444541013456777889999--
Q gi|254780218|r 3 SGLFISFEGIEGAGKTTHISLLKRFLQR-KNYDVHVTREPGGTPAAEAARHV---LLSCGVDEFGAEAEAIVFAAARL-- 76 (225)
Q Consensus 3 ~g~~I~iEGiDGsGKsTq~~~L~~~L~~-~g~~v~~~~eP~~t~~ge~ir~~---l~~~~~~~~~~~~~~lLfaadr~-- 76 (225)
T Consensus 1 m~~fiviEGiDGaGKTT~~~~l~~~l~~l~g~~~~~t~EPg~t~~ge~IR~~l~D~l~~~~~~~~~~~~alLFaAdR~~H 80 (211)
T TIGR00041 1 MGMFIVIEGIDGAGKTTQLNLLKKLLKELEGYKVLFTREPGGTPIGEKIRELLQDLLNENEEPLTDKTEALLFAADRHDH 80 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 97458885115875899999999997751383478871899987899999999987414666335999999999858999
Q ss_pred -HHHHHHHHHHHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf -9776356554234525872354243100010034442457765444203889841156652034877644321111100
Q gi|254780218|r 77 -DHVENVIRPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRE 155 (225)
Q Consensus 77 -~~~~~~I~p~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~ 155 (225)
T Consensus 81 L~~~~~~ik~al~~~~~Vi~DRy~~Ss~AYQg~~~~~d~~~~~~lN~~~~~~~~Pd~t~~Ld~d~e~al~R~~~~g~~~- 159 (211)
T TIGR00041 81 LEHVEEKIKPALAQGKLVISDRYLFSSIAYQGLARGIDIDLVLELNEDALGDMKPDLTILLDIDPEVALERLRKRGEDE- 159 (211)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHCCCCHH-
T ss_conf 9978987788986696799841124357775422568888999997752113586668988607377988752047234-
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHCC----CCEEEECCCCC-HHHHHHHH
Q ss_conf 000000211288999999999999999789----94999818978-89999999
Q gi|254780218|r 156 SACLDYFERKDVMIHEKRRQIFLDIARNQP----DRCHIVDSAHS-FQSVATNI 204 (225)
Q Consensus 156 ~~~~d~~E~~~~~~~~kv~~~y~~la~~~~----~~~~~IDa~~~-~eei~~~I 204 (225)
T Consensus 160 --~~~~~~~e~~d~~~~v~~~Yl~L~~~~~rkGD~~~~~~Da~~~~~~~v~~~I 211 (211)
T TIGR00041 160 --LLDREEFEKLDFFEKVRERYLELADKFERKGDKKIVVIDATNSGVEEVEQDI 211 (211)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHC
T ss_conf --6655542118999999999999999841468863799866774478898609