HHsearch alignment for GI: 254780218 and conserved domain: TIGR00041

>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=100.00  E-value=0  Score=388.60  Aligned_cols=199  Identities=39%  Similarity=0.626  Sum_probs=185.3

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCHHHHC---CCCCCCCCCHHHHHHHHHHHHHH--
Q ss_conf             8868998678887979999999999997-79819998778898441001100---12444541013456777889999--
Q gi|254780218|r    3 SGLFISFEGIEGAGKTTHISLLKRFLQR-KNYDVHVTREPGGTPAAEAARHV---LLSCGVDEFGAEAEAIVFAAARL--   76 (225)
Q Consensus         3 ~g~~I~iEGiDGsGKsTq~~~L~~~L~~-~g~~v~~~~eP~~t~~ge~ir~~---l~~~~~~~~~~~~~~lLfaadr~--   76 (225)
T Consensus         1 m~~fiviEGiDGaGKTT~~~~l~~~l~~l~g~~~~~t~EPg~t~~ge~IR~~l~D~l~~~~~~~~~~~~alLFaAdR~~H   80 (211)
T TIGR00041         1 MGMFIVIEGIDGAGKTTQLNLLKKLLKELEGYKVLFTREPGGTPIGEKIRELLQDLLNENEEPLTDKTEALLFAADRHDH   80 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             97458885115875899999999997751383478871899987899999999987414666335999999999858999


Q ss_pred             -HHHHHHHHHHHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf             -9776356554234525872354243100010034442457765444203889841156652034877644321111100
Q gi|254780218|r   77 -DHVENVIRPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRE  155 (225)
Q Consensus        77 -~~~~~~I~p~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~  155 (225)
T Consensus        81 L~~~~~~ik~al~~~~~Vi~DRy~~Ss~AYQg~~~~~d~~~~~~lN~~~~~~~~Pd~t~~Ld~d~e~al~R~~~~g~~~-  159 (211)
T TIGR00041        81 LEHVEEKIKPALAQGKLVISDRYLFSSIAYQGLARGIDIDLVLELNEDALGDMKPDLTILLDIDPEVALERLRKRGEDE-  159 (211)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHCCCCHH-
T ss_conf             9978987788986696799841124357775422568888999997752113586668988607377988752047234-


Q ss_pred             CCHHHHHHHCCHHHHHHHHHHHHHHHHHCC----CCEEEECCCCC-HHHHHHHH
Q ss_conf             000000211288999999999999999789----94999818978-89999999
Q gi|254780218|r  156 SACLDYFERKDVMIHEKRRQIFLDIARNQP----DRCHIVDSAHS-FQSVATNI  204 (225)
Q Consensus       156 ~~~~d~~E~~~~~~~~kv~~~y~~la~~~~----~~~~~IDa~~~-~eei~~~I  204 (225)
T Consensus       160 --~~~~~~~e~~d~~~~v~~~Yl~L~~~~~rkGD~~~~~~Da~~~~~~~v~~~I  211 (211)
T TIGR00041       160 --LLDREEFEKLDFFEKVRERYLELADKFERKGDKKIVVIDATNSGVEEVEQDI  211 (211)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHC
T ss_conf             --6655542118999999999999999841468863799866774478898609