HHsearch alignment for GI: 254780218 and conserved domain: TIGR00235

>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=97.37  E-value=0.0042  Score=38.80  Aligned_cols=134  Identities=19%  Similarity=0.210  Sum_probs=72.5

Q ss_pred             CCEEEEECCCCCCH----HHHHHHHHHHHHHCCCCEEEEECCC-CCCC--CCHHHHCCCCCCCCCCHHHHH--HHHHHHH
Q ss_conf             86899867888797----9999999999997798199987788-9844--100110012444541013456--7778899
Q gi|254780218|r    4 GLFISFEGIEGAGK----TTHISLLKRFLQRKNYDVHVTREPG-GTPA--AEAARHVLLSCGVDEFGAEAE--AIVFAAA   74 (225)
Q Consensus         4 g~~I~iEGiDGsGK----sTq~~~L~~~L~~~g~~v~~~~eP~-~t~~--ge~ir~~l~~~~~~~~~~~~~--~lLfaad   74 (225)
T Consensus        10 c~iigI~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~~~~~~r--~~~NfDHP~AfD~~Ll----   83 (220)
T TIGR00235        10 CIIIGISGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSDLEMAER--KKTNFDHPDAFDNDLL----   83 (220)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHH--HCCCCCCCHHCCHHHH----
T ss_conf             1799701766101567899999999998314001457750324458898873124643--1258898003037999----


Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCEEHHC-CCCC-------------CCHHHHHHHHHHHCCCCCCCEEEEEEECH
Q ss_conf             999776356554234525872354243100010-0344-------------42457765444203889841156652034
Q gi|254780218|r   75 RLDHVENVIRPALMEGKILLCDRFLDSSYAYQG-ERDS-------------SQHLFLDSLQEISVQEVMPDCTIILDLPV  140 (225)
Q Consensus        75 r~~~~~~~I~p~L~~g~iVI~DRy~~S~lAYQ~-~~~~-------------~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~  140 (225)
T Consensus        84 -~~Hl~-----nLk~g~~~--~~P~Ydyv~HtRv~~eT~~~~P~~VvIlEGi~~l~D~Rl~~------L~dlkifvDt~~  149 (220)
T TIGR00235        84 -YEHLK-----NLKNGSAI--DVPVYDYVNHTRVKKETVHVEPKDVVILEGILLLTDERLRD------LMDLKIFVDTPL  149 (220)
T ss_pred             -HHHHH-----HHHCCCEE--CCCCCCCCCEECCCCCCEEECCEEEEEEECCHHHHHHHHHH------HHCCEEEEECCC
T ss_conf             -99999-----98468802--24542541002025562687350689970618888799988------718236774683


Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             87764432111110000
Q gi|254780218|r  141 DIGLKRVQNRYSLRESA  157 (225)
Q Consensus       141 e~a~~Ri~~R~~~~~~~  157 (225)
T Consensus       150 D~rliRRl~RD~~~RGR  166 (220)
T TIGR00235       150 DIRLIRRLERDIEERGR  166 (220)
T ss_pred             HHHHHHHHHHHHHHCCC
T ss_conf             03256565655754289