HHsearch alignment for GI: 254780218 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=95.48 E-value=0.018 Score=34.98 Aligned_cols=53 Identities=32% Similarity=0.473 Sum_probs=37.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE------------------ECCC-CC-CCCCHHHHCCC
Q ss_conf 8886899867888797999999999999779819998------------------7788-98-44100110012
Q gi|254780218|r 2 NSGLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVT------------------REPG-GT-PAAEAARHVLL 55 (225)
Q Consensus 2 ~~g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~------------------~eP~-~t-~~ge~ir~~l~ 55 (225)
T Consensus 126 ~~GL-iLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTIEDPIEyvh~~~~sli~QREvG~DT~sF~~ALraALR 198 (350)
T TIGR01420 126 PRGL-ILVTGPTGSGKSTTLASMIDYINKNKAGHIITIEDPIEYVHKNKRSLINQREVGLDTLSFANALRAALR 198 (350)
T ss_pred CCCC-EEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 6993-898768898678999999978740388882563177314104770245436246754579999768410