HHsearch alignment for GI: 254780218 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=95.08 E-value=0.039 Score=32.98 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=33.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCC-------------CCEEEEECCCCCCCCCHHHHC
Q ss_conf 886899867888797999999999999779-------------819998778898441001100
Q gi|254780218|r 3 SGLFISFEGIEGAGKTTHISLLKRFLQRKN-------------YDVHVTREPGGTPAAEAARHV 53 (225)
Q Consensus 3 ~g~~I~iEGiDGsGKsTq~~~L~~~L~~~g-------------~~v~~~~eP~~t~~ge~ir~~ 53 (225)
T Consensus 364 ~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~La-AP----TGrAAkRl 422 (769)
T TIGR01448 364 QDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLA-AP----TGRAAKRL 422 (769)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE-CC----CHHHHHHC
T ss_conf 0948998577888616899999999987168775531245677648873-77----43788851