HHsearch alignment for GI: 254780218 and conserved domain: cd00464
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.48 E-value=1e-06 Score=60.40 Aligned_cols=149 Identities=21% Similarity=0.174 Sum_probs=70.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99867888797999999999999779819998778898441001100124445410134567778899999776356554
Q gi|254780218|r 7 ISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVENVIRPA 86 (225)
Q Consensus 7 I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~~~I~p~ 86 (225)
T Consensus 2 I~LiG~~G~GKstigk~la~~l---~~~fiD~D~~Ie~~~g~si~eif~~~Ge~~F------------R~-~E~~~l~~~ 65 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL---GLPFVDLDELIEQRAGMSIPEIFAEEGEEGF------------RE-LEREVLLLL 65 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHH---CCCEEECCHHHHHHHCCCHHHHHHHCCHHHH------------HH-HHHHHHHHH
T ss_conf 8998899998899999999997---9897968599999949999999987493878------------99-999999998
Q ss_pred HCCCCEEEECCCCCCCEEHHCCCCCCC--HHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 234525872354243100010034442--457765444203889841156652034877644321111100000000211
Q gi|254780218|r 87 LMEGKILLCDRFLDSSYAYQGERDSSQ--HLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRESACLDYFER 164 (225)
Q Consensus 87 L~~g~iVI~DRy~~S~lAYQ~~~~~~~--~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~ 164 (225)
T Consensus 66 ~~~~~~VIs~----------G--GG~v~~~~~~~~l~-------~~~~vI~L~~~~~~l~~Rl~~~~~RPll~~~~~-~~ 125 (154)
T cd00464 66 LTKENAVIAT----------G--GGAVLREENRRLLL-------ENGIVVWLDASPEELLERLARDKTRPLLQDEDP-ER 125 (154)
T ss_pred HCCCCEEEEC----------C--CCCCCCHHHHHHHH-------HCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCH-HH
T ss_conf 5689859973----------8--97336899999999-------579089995799999999607999998889999-99
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEECC-CCCHH
Q ss_conf 28899999999999999978994999818-97889
Q gi|254780218|r 165 KDVMIHEKRRQIFLDIARNQPDRCHIVDS-AHSFQ 198 (225)
Q Consensus 165 ~~~~~~~kv~~~y~~la~~~~~~~~~IDa-~~~~e 198 (225)
T Consensus 126 -l~~l~~~R~~~Y~~~Ad------~~i~~~~~s~~ 153 (154)
T cd00464 126 -LRELLEEREPLYREVAD------LTIDTDELSPE 153 (154)
T ss_pred -HHHHHHHHHHHHHHHCC------EEEECCCCCCC
T ss_conf -99999999999998799------99979898999