HHsearch alignment for GI: 254780218 and conserved domain: cd01122
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.41 E-value=0.044 Score=32.72 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=32.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH-HHHCCCCEEEEE
Q ss_conf 988868998678887979999999999-997798199987
Q gi|254780218|r 1 MNSGLFISFEGIEGAGKTTHISLLKRF-LQRKNYDVHVTR 39 (225)
Q Consensus 1 M~~g~~I~iEGiDGsGKsTq~~~L~~~-L~~~g~~v~~~~ 39 (225)
T Consensus 27 l~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~S 66 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9998089999689986999999999999997699089997