HHsearch alignment for GI: 254780218 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.88 E-value=0.026 Score=34.02 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=27.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8886899867888797999999999999779819998
Q gi|254780218|r 2 NSGLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVT 38 (225)
Q Consensus 2 ~~g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~ 38 (225)
T Consensus 23 ~~~~nIlIsG~tGSGKTTll~al~~~i~~~-~rivti 58 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITI 58 (186)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHCCCC-CCEEEE
T ss_conf 859989998999998999999999613345-645984