HHsearch alignment for GI: 254780218 and conserved domain: cd01394
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.08 E-value=0.023 Score=34.34 Aligned_cols=38 Identities=21% Similarity=0.145 Sum_probs=32.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88868998678887979999999999997798199987
Q gi|254780218|r 2 NSGLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTR 39 (225)
Q Consensus 2 ~~g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~ 39 (225)
T Consensus 17 ~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~Yid 54 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 78879999899998499999999999863698699996