HHsearch alignment for GI: 254780218 and conserved domain: cd01394

>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.08  E-value=0.023  Score=34.34  Aligned_cols=38  Identities=21%  Similarity=0.145  Sum_probs=32.7

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             88868998678887979999999999997798199987
Q gi|254780218|r    2 NSGLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTR   39 (225)
Q Consensus         2 ~~g~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~   39 (225)
T Consensus        17 ~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~Yid   54 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID   54 (218)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             78879999899998499999999999863698699996