HHsearch alignment for GI: 254780218 and conserved domain: cd01672
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=100.00 E-value=0 Score=359.36 Aligned_cols=199 Identities=42% Similarity=0.714 Sum_probs=186.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68998678887979999999999997798199987788984410011001244454101345677788999997763565
Q gi|254780218|r 5 LFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVENVIR 84 (225)
Q Consensus 5 ~~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~~~I~ 84 (225)
T Consensus 1 m~IviEG~dGsGKsT~~~~L~~~L~~~g~~v~~~~eP~~~~~~~~ir~~l~~~~~~~~~~~~~~lL~~a~R~~~~~~~i~ 80 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK 80 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999899899999999999999997799389986999984678999987333545689999999999999999999999
Q ss_pred HHHCCCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 54234525872354243100010034442457765444203889841156652034877644321111100000000211
Q gi|254780218|r 85 PALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRESACLDYFER 164 (225)
Q Consensus 85 p~L~~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~ 164 (225)
T Consensus 81 ~~l~~~~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~pe~~~~Ri~~R~~~------~~~e~ 154 (200)
T cd01672 81 PALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRD------DRDEQ 154 (200)
T ss_pred HHHHCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCC------CHHHH
T ss_conf 888459989984551128888774069999999999987746999998999817999999999846898------72765
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 288999999999999999789949998189788999999999999
Q gi|254780218|r 165 KDVMIHEKRRQIFLDIARNQPDRCHIVDSAHSFQSVATNILNIVW 209 (225)
Q Consensus 165 ~~~~~~~kv~~~y~~la~~~~~~~~~IDa~~~~eei~~~I~~~i~ 209 (225)
T Consensus 155 ~~~~~~~kv~~~Y~~~~~~~~~~~~vIDa~~~~eev~~~I~~~i~ 199 (200)
T cd01672 155 EGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 159999999999999997588978998699999999999999971