HHsearch alignment for GI: 254780218 and conserved domain: cd02026
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.92 E-value=0.00024 Score=46.24 Aligned_cols=174 Identities=15% Similarity=0.183 Sum_probs=82.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC--CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89986788879799999999999977981999877889844--1001100124445410134567778899999776356
Q gi|254780218|r 6 FISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPA--AEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVENVI 83 (225)
Q Consensus 6 ~I~iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~--ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~~~I 83 (225)
T Consensus 1 IIgVaG~SGSGKTTv~~~i~~ifg~~~v~vI~~----D~Yhr~dr~~r~~---~~~t~~~P~And~-------dll~~~l 66 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICL----DDYHSLDRKGRKE---TGITALDPRANNF-------DLMYEQL 66 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC----CCCCCCCHHHHHH---HCCCCCCCCHHHH-------HHHHHHH
T ss_conf 989978887869999999999858487699965----7778899899987---1877689752349-------9999999
Q ss_pred HHHHCCCCEEEECCCCCCCEEHHCCC--CCCCHHHHHHHHHHHCCC--CCCCEEEEEEECHHHHHHHHHHHHHHHHCCHH
Q ss_conf 55423452587235424310001003--444245776544420388--98411566520348776443211111000000
Q gi|254780218|r 84 RPALMEGKILLCDRFLDSSYAYQGER--DSSQHLFLDSLQEISVQE--VMPDCTIILDLPVDIGLKRVQNRYSLRESACL 159 (225)
Q Consensus 84 ~p~L~~g~iVI~DRy~~S~lAYQ~~~--~~~~~~~i~~l~~~~~~~--~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~ 159 (225)
T Consensus 67 -~~Lk~Gk~i~~PvYdh~tg~~~~~e~i~p~diII~EGLh~l~~~~lrdl~DLkIfVD~d~dlr~~rKI~RD~~ERGyS~ 145 (273)
T cd02026 67 -KALKEGQAIEKPIYNHVTGLIDPPELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSL 145 (273)
T ss_pred -HHHHCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECEECCCCHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHCCCH
T ss_conf -9998599534322214589657756506874799922000266889866074688568764799998776676648899
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHCC----CCEEEECCCCCHH
Q ss_conf 00211288999999999999999789----9499981897889
Q gi|254780218|r 160 DYFERKDVMIHEKRRQIFLDIARNQP----DRCHIVDSAHSFQ 198 (225)
Q Consensus 160 d~~E~~~~~~~~kv~~~y~~la~~~~----~~~~~IDa~~~~e 198 (225)
T Consensus 146 E~V----~~~I~rR~pDy~~yI~PQk~~ADI~iq~vPt~l~~~ 184 (273)
T cd02026 146 EDV----LASIEARKPDFEAYIDPQKQYADVVIQVLPTQLIPD 184 (273)
T ss_pred HHH----HHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCC
T ss_conf 999----999986047889750757500128999527667888