HHsearch alignment for GI: 254780218 and conserved domain: cd03229

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69  E-value=0.011  Score=36.32  Aligned_cols=27  Identities=22%  Similarity=0.442  Sum_probs=23.8

Q ss_conf             888689986788879799999999999
Q gi|254780218|r    2 NSGLFISFEGIEGAGKTTHISLLKRFL   28 (225)
Q Consensus         2 ~~g~~I~iEGiDGsGKsTq~~~L~~~L   28 (225)
T Consensus        24 ~~Ge~~~ivGpSG~GKSTllr~i~Gl~   50 (178)
T cd03229          24 EAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_conf             899899999999983999999998599