HHsearch alignment for GI: 254780218 and conserved domain: cd03264
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.015 Score=35.40 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 88868998678887979999999999997
Q gi|254780218|r 2 NSGLFISFEGIEGAGKTTHISLLKRFLQR 30 (225)
Q Consensus 2 ~~g~~I~iEGiDGsGKsTq~~~L~~~L~~ 30 (225)
T Consensus 24 ~~G-i~gllGpNGAGKSTll~~i~Gl~~p 51 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLTPP 51 (211)
T ss_pred CCC-EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 897-5999999982399999999759668