HHsearch alignment for GI: 254780218 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.94 E-value=0.018 Score=34.97 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=18.8
Q ss_pred CCCCCEEEEECCCCCCHHHHH
Q ss_conf 988868998678887979999
Q gi|254780218|r 1 MNSGLFISFEGIEGAGKTTHI 21 (225)
Q Consensus 1 M~~g~~I~iEGiDGsGKsTq~ 21 (225)
T Consensus 18 i~~Ge~~aIvG~nGsGKSTL~ 38 (226)
T cd03270 18 IPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred ECCCCEEEEECCCCCHHHHHH
T ss_conf 859989999878996098983