HHsearch alignment for GI: 254780218 and conserved domain: cd03271

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.68  E-value=0.011  Score=36.32  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=19.7

Q ss_conf             8886899867888797999999
Q gi|254780218|r    2 NSGLFISFEGIEGAGKTTHISL   23 (225)
Q Consensus         2 ~~g~~I~iEGiDGsGKsTq~~~   23 (225)
T Consensus        19 ~~G~~~aIiG~sGsGKSTLl~~   40 (261)
T cd03271          19 PLGVLTCVTGVSGSGKSSLIND   40 (261)
T ss_conf             8999999987999869999999