HHsearch alignment for GI: 254780218 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21 E-value=0.017 Score=35.09 Aligned_cols=29 Identities=24% Similarity=0.587 Sum_probs=24.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 98886899867888797999999999999
Q gi|254780218|r 1 MNSGLFISFEGIEGAGKTTHISLLKRFLQ 29 (225)
Q Consensus 1 M~~g~~I~iEGiDGsGKsTq~~~L~~~L~ 29 (225)
T Consensus 47 i~~GE~~~ivG~SGsGKSTLLr~i~GL~~ 75 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 88999999998998489999999975999